Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3737Recombinase. (563 aa)    
Predicted Functional Partners:
BF49_3042
Mlr4903 protein.
  
     0.503
BF49_0304
Bll0546 hypothetical protein.
  
     0.486
BF49_3738
Hypothetical protein.
       0.455
BF49_2416
Dienelactone hydrolase and related enzymes.
  
     0.419
glk
Glucokinase EC 2712; Belongs to the bacterial glucokinase family.
     
  0.413
BF49_1896
Cytochrome ctype biogenesis protein CcdA DsbD analog.
   
    0.410
BF49_7158
Cytochrome ctype biogenesis protein CcdA DsbD analog.
   
    0.410
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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