Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3739Sensor histidine kinase putative. (516 aa)    
Predicted Functional Partners:
BF49_3740
Sensor protein.
 
   
 0.829
BF49_3218
DNAdirected RNA polymerase specialized sigma subunit sigma24like.
 
   
 0.784
BF49_0312
Twocomponent response regulator.
 
   
 0.771
BF49_6379
Phytochrome twocomponent sensor histidine kinase EC 273.
  
   
 0.756
BF49_6942
Twocomponent response regulator.
 
   
 0.753
BF49_6796
Twocomponent response regulator.
 
   
 0.738
BF49_3220
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
   
 0.580
BF49_3986
FIG006285 ICClike protein phosphoesterase.
  
     0.499
BF49_3700
Sensory transduction regulatory protein.
  
     0.489
BF49_4679
Response regulator.
  
     0.472
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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