BF49_3783 protein (Bradyrhizobium sp.) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

BF49_3783

Putative diheme cytochrome c553. (415 aa)

Predicted Functional Partners:

BF49_2306

0.955

BF49_3784

0.947

BF49_5272

0.935

BF49_5273

0.926

BF49_3779

0.900

BF49_3781

0.882

BF49_2624

0.877

BF49_3780

0.871

BF49_2057

0.865

BF49_5274

0.864

Your Current Organism:

Bradyrhizobium sp.

NCBI taxonomy Id: 376
Other names: B. sp.

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
BF49_2057	BF49_2306	Cytochrome c oxidase polypeptide II EC 1931.	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.994
BF49_2057	BF49_2624	Cytochrome c oxidase polypeptide II EC 1931.	Tungstencontaining formate dehydrogenase beta subunit.	0.943
BF49_2057	BF49_3780	Cytochrome c oxidase polypeptide II EC 1931.	Cytochrome c oxidase BOa3type chain I EC 1931.	0.908
BF49_2057	BF49_3783	Cytochrome c oxidase polypeptide II EC 1931.	Putative diheme cytochrome c553.	0.865
BF49_2057	BF49_5272	Cytochrome c oxidase polypeptide II EC 1931.	Cytochrome c oxidase polypeptide III EC 1931.	0.991
BF49_2057	BF49_5273	Cytochrome c oxidase polypeptide II EC 1931.	Cytochrome c oxidase polypeptide I EC 1931; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.	0.997
BF49_2057	BF49_5274	Cytochrome c oxidase polypeptide II EC 1931.	Cytochrome c oxidase polypeptide II EC 1931.	0.900
BF49_2306	BF49_2057	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome c oxidase polypeptide II EC 1931.	0.994
BF49_2306	BF49_2624	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Tungstencontaining formate dehydrogenase beta subunit.	0.998
BF49_2306	BF49_3779	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome c553like.	0.942
BF49_2306	BF49_3780	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome c oxidase BOa3type chain I EC 1931.	0.990
BF49_2306	BF49_3781	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome c oxidase BOa3type chain II EC 1931.	0.984
BF49_2306	BF49_3783	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Putative diheme cytochrome c553.	0.955
BF49_2306	BF49_3784	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome c553like.	0.937
BF49_2306	BF49_5272	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome c oxidase polypeptide III EC 1931.	0.996
BF49_2306	BF49_5273	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome c oxidase polypeptide I EC 1931; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.	0.997
BF49_2306	BF49_5274	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome c oxidase polypeptide II EC 1931.	0.997
BF49_2624	BF49_2057	Tungstencontaining formate dehydrogenase beta subunit.	Cytochrome c oxidase polypeptide II EC 1931.	0.943
BF49_2624	BF49_2306	Tungstencontaining formate dehydrogenase beta subunit.	Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.998
BF49_2624	BF49_3780	Tungstencontaining formate dehydrogenase beta subunit.	Cytochrome c oxidase BOa3type chain I EC 1931.	0.917