Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_3832Flp pilus assembly protein pilin Flp. (53 aa)    
Predicted Functional Partners:
BF49_4210
Type IIIV secretion system ATPase TadZCpaE associated with Flp pilus assembly.
 
  
 0.868
BF49_0178
Type IIIV secretion system ATPase TadZCpaE associated with Flp pilus assembly.
 
  
 0.857
BF49_4213
Flp pilus assembly protein RcpCCpaB.
 
  
 0.837
BF49_0175
Flp pilus assembly protein RcpCCpaB.
 
  
 0.830
BF49_4214
Type IV prepilin peptidase TadVCpaA.
 
  
 0.825
BF49_6415
FIG00853462 hypothetical protein.
 
  
 0.811
BF49_4218
Similar to secretin RcpACpaC associated with Flp pilus assembly.
 
  
 0.798
BF49_4220
FIG00441414 hypothetical protein.
 
  
 0.789
BF49_4219
Similar to TadZCpaE associated with Flp pilus assembly.
 
  
 0.785
BF49_4208
Flp pilus assembly protein TadB.
 
  
 0.767
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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