STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xylB-2Xylulose kinase EC 27117. (484 aa)    
Predicted Functional Partners:
xylA
Xylose isomerase EC 5315; Belongs to the xylose isomerase family.
 
 
 0.998
BF49_2157
Ribulosephosphate 3epimerase EC 5131; Belongs to the ribulose-phosphate 3-epimerase family.
    
 0.926
BF49_5968
Ribulosephosphate 3epimerase EC 5131; Belongs to the ribulose-phosphate 3-epimerase family.
    
 0.926
xylB
Xylulose kinase EC 27117.
  
  
 
0.903
BF49_3899
Dxylose transport ATPbinding protein XylG.
  
  
 0.768
BF49_3900
Xylose ABC transporter permease protein XylH; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.768
BF49_3896
Novel Xylose regulator from LacI family.
 
  
 0.759
BF49_5423
Ribulose5phosphate 4epimerase and related epimerases and aldolases.
 
 
 0.693
BF49_2365
Aerobic glycerol3phosphate dehydrogenase EC 1153; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
 
 0.683
BF49_4837
Dmannonate oxidoreductase EC 11157.
 
 
 0.671
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.