Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_3931Murein endopeptidase. (337 aa)    
Predicted Functional Partners:
BF49_4398
Protein of unknown function DUF882.
  
     0.722
BF49_2784
FIG00441216 hypothetical protein.
  
     0.649
BF49_3930
Molybdenum ABC transporter periplasmic molybdenumbinding protein ModA TC 3A181.
 
     0.644
BF49_2783
Protein of unknown function DUF463 YcjXlike protein.
  
     0.638
BF49_3928
Molybdenum transport ATPbinding protein ModC TC 3A181; Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family.
 
     0.618
BF49_3929
Molybdenum transport system permease protein ModB TC 3A181; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
     0.606
BF49_2003
Protein of unknown function DUF900 hydrolase family protein.
  
     0.506
BF49_6443
FIG00442641 hypothetical protein.
  
     0.477
BF49_3003
Ribonuclease; Belongs to the RNase T2 family.
  
     0.456
BF49_3272
Methylaccepting chemotaxis protein.
 
     0.441
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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