Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3949Hypothetical protein. (256 aa)    
Predicted Functional Partners:
BF49_3948
Bll4091 protein.
 
     0.803
BF49_3267
Cell division protein FtsX.
   
 
 0.756
BF49_2351
Hypothetical protein.
    
 
 0.667
ftsE
Cell division transporter ATPbinding protein FtsE TC 3A511; Part of the ABC transporter FtsEX involved in cellular division.
  
 
 0.661
BF49_7247
NacetylmuramoylLalanine amidase.
 
 
 0.618
BF49_5044
NacetylmuramoylLalanine amidase EC 35128.
  
 
 0.596
BF49_0424
Carboxylterminal protease EC 3421102; Belongs to the peptidase S41A family.
    
 
 0.534
BF49_6733
Carboxylterminal protease family protein; Belongs to the peptidase S41A family.
    
 
 0.534
BF49_5047
Cell division protein FtsI Peptidoglycan synthetase EC 241129.
    
 0.530
BF49_2142
Twocomponent hybrid sensor and regulator.
  
  
 0.511
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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