Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3950FIG00440537 hypothetical protein. (525 aa)    
Predicted Functional Partners:
BF49_2269
Mll1762 protein.
  
     0.736
BF49_5969
Bll5679 protein.
  
   
 0.716
BF49_0448
FIG00442104 hypothetical protein.
  
     0.679
BF49_6892
FIG01265301 hypothetical protein.
  
     0.676
BF49_2946
FIG00853207 hypothetical protein.
  
     0.667
BF49_1563
FIG00442554 hypothetical protein.
  
     0.665
BF49_0472
Hypothetical protein.
 
   
 0.656
BF49_0241
FIG00440108 hypothetical protein.
  
     0.654
BF49_3060
FIG00441555 hypothetical protein.
 
  
 0.641
BF49_1627
FIG00852424 hypothetical protein.
 
  
 0.635
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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