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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysSLysyltRNA synthetase class I EC 6116; Belongs to the class-I aminoacyl-tRNA synthetase family. (547 aa)    
Predicted Functional Partners:
BF49_3350
Bll1313 protein.
  
    0.798
BF49_5156
FIG00443822 hypothetical protein.
  
     0.730
BF49_4397
FIG00451076 hypothetical protein; Belongs to the UPF0335 family.
  
     0.659
BF49_0087
FIG061771 ATPdependent nuclease subunit A; Belongs to the helicase family. UvrD subfamily.
  
     0.601
nadK
NAD kinase EC 27123; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
  
     0.581
BF49_3600
Transcription antitermination protein NusG; Participates in transcription elongation, termination and antitermination.
   
    0.572
nusG
Transcription antitermination protein NusG; Participates in transcription elongation, termination and antitermination.
   
    0.572
BF49_4990
Aerobic cobaltochelatase CobT subunit EC 6612.
  
     0.566
rplS
LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
    0.565
BF49_0086
FIG041266 ATPdependent nuclease subunit B.
  
     0.529
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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