Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3975Phage repressor; Belongs to the peptidase S24 family. (217 aa)    
Predicted Functional Partners:
BF49_7037
Hypothetical protein.
  
     0.589
BF49_3974
Carbonic anhydrase EC 4211.
       0.542
BF49_4220
FIG00441414 hypothetical protein.
  
     0.538
BF49_3976
FIG005495 hypothetical protein.
       0.534
pyrD
Dihydroorotate dehydrogenase EC 1331; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
       0.534
BF49_4304
FIG026765 hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.
  
    0.508
BF49_0423
Putative periplasmic protein YibQ distant homology with nucleoside diphosphatase and polysaccharide deacetylase.
  
     0.477
BF49_4206
Flp pilus assembly protein TadD contains TPR repeat.
  
     0.457
BF49_1016
Mlr7403 protein.
  
     0.455
BF49_0179
Flp pilus assembly protein TadD contains TPR repeat.
  
     0.451
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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