Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3978DNAdamageinducible protein F. (435 aa)    
Predicted Functional Partners:
BF49_3979
Ribonuclease Z EC 312611.
     
 0.741
BF49_3980
FIG00450046 hypothetical protein.
       0.656
BF49_4301
NADPHdependent glyceraldehyde3phosphate dehydrogenase EC 12113 NADdependent glyceraldehyde3phosphate dehydrogenase EC 12112; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.633
BF49_0100
SSU ribosomal protein S1p; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
    0.582
BF49_1690
Phytoene synthase EC 25132.
   
  
 0.543
BF49_1691
Phytoene synthase EC 25132.
   
  
 0.543
BF49_6804
Phytoene synthase EC 25132.
   
  
 0.543
rnc
Ribonuclease III EC 31263; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
 
  0.539
BF49_3972
ATPdependent helicase HrpB.
     
  0.526
BF49_1638
Bll3052 protein.
 
 
  0.506
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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