Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BF49_3981ATPdependent DNA ligase EC 6511 LigC. (625 aa)    
Predicted Functional Partners:
BF49_3982
mRNA 3end processing factor.
 
 0.980
BF49_3985
FIG003033 Helicase domain protein.
 
    0.860
BF49_3986
FIG006285 ICClike protein phosphoesterase.
 
     0.846
polA
DNA polymerase I EC 2777; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.771
BF49_7325
DNA polymerase III beta subunit EC 2777; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initia [...]
   
 0.711
BF49_3983
Hypothetical protein.
       0.646
BF49_5528
ATPdependent DNA ligase EC 6511 clustered with Ku protein LigD.
  
     0.643
BF49_6882
ATPdependent DNA ligase.
  
     0.627
BF49_3869
DNA polymerase X family.
  
 0.583
BF49_3749
ATPdependent DNA ligase EC 6511 clustered with Ku protein LigD.
 
   
 0.559
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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