Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3986FIG006285 ICClike protein phosphoesterase. (228 aa)    
Predicted Functional Partners:
BF49_3985
FIG003033 Helicase domain protein.
 
    0.936
BF49_3982
mRNA 3end processing factor.
 
     0.848
BF49_3981
ATPdependent DNA ligase EC 6511 LigC.
 
     0.846
BF49_4263
FIG00443378 hypothetical protein.
   
    0.507
BF49_3739
Sensor histidine kinase putative.
  
     0.499
BF49_3984
FIG00442099 hypothetical protein.
       0.496
BF49_1894
Phytochrome twocomponent sensor histidine kinase EC 273.
  
     0.491
BF49_2091
Chemotaxis protein methyltransferase CheR EC 21180.
  
     0.464
BF49_7283
FIG00441575 hypothetical protein.
  
     0.454
BF49_6405
FIG00450205 hypothetical protein.
  
     0.444
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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