Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_3987Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family. (291 aa)    
Predicted Functional Partners:
BF49_1275
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.717
BF49_4324
LysRfamily transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.670
BF49_3117
Transcriptional regulatory protein; Belongs to the LysR transcriptional regulatory family.
  
     0.641
BF49_3988
Permease of the drugmetabolite transporter DMT superfamily.
 
    0.629
BF49_4095
Glycine cleavage system transcriptional activator GcvA; Belongs to the LysR transcriptional regulatory family.
  
     0.614
BF49_1886
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.543
BF49_3989
FIG01135548 hypothetical protein.
       0.540
BF49_4334
Transcriptional regulatory protein; Belongs to the LysR transcriptional regulatory family.
  
     0.523
BF49_6671
Transcriptional regulatory protein; Belongs to the LysR transcriptional regulatory family.
  
     0.506
BF49_2957
Transcriptional regulatory protein; Belongs to the LysR transcriptional regulatory family.
  
     0.491
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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