Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3992TPR repeat SEL1 subfamily. (1144 aa)    
Predicted Functional Partners:
BF49_2462
Alginate biosynthesis protein AlgX.
  
 0.844
BF49_4274
Probable periplasmic protein Cj0610c imported Campylobacter jejuni strain NCTC 11168.
  
     0.747
BF49_5754
Kinesinlike protein.
  
     0.718
BF49_5969
Bll5679 protein.
  
 
   0.717
BF49_1638
Bll3052 protein.
 
 
 
 0.713
BF49_6591
FIG00440858 hypothetical protein.
  
     0.708
BF49_3173
Outer membrane proteinprotective antigen OMA87.
  
    0.706
BF49_5138
TolA protein.
  
   
 0.688
BF49_1563
FIG00442554 hypothetical protein.
  
     0.685
BF49_2158
Probable RuBisCoexpression protein CbbX.
   
 0.680
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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