Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3993Transcriptional regulator PadR family. (196 aa)    
Predicted Functional Partners:
BF49_3994
FIG00445140 hypothetical protein.
 
     0.627
BF49_2686
Osuccinylbenzoic acidCoA ligase EC 62126.
 
     0.456
BF49_6917
Transcriptional regulator MerR family.
 
   
 0.435
BF49_2406
Transcriptional regulator TetR family.
  
   
 0.428
cobB-2
NADdependent protein deacetylase of SIR2 family; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.
  
    0.427
cobB-3
NADdependent protein deacetylase of SIR2 family; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
  
    0.427
BF49_7108
NADdependent protein deacetylase of SIR2 family.
  
    0.427
BF49_3995
AcylCoA dehydrogenase EC 1387.
       0.421
BF49_4241
Transcriptional regulator TetR family.
  
   
 0.418
BF49_2851
Shortchain dehydrogenasereductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.417
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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