Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_3994FIG00445140 hypothetical protein. (128 aa)    
Predicted Functional Partners:
BF49_3995
AcylCoA dehydrogenase EC 1387.
       0.657
BF49_3993
Transcriptional regulator PadR family.
 
     0.627
BF49_7290
InterPro IPR001128 COGs COG2124; Belongs to the cytochrome P450 family.
  
 
  0.607
BF49_1756
COGs COG0183.
  
     0.587
BF49_1815
FIG00443026 hypothetical protein.
  
     0.565
BF49_1803
Hypothetical protein.
  
     0.549
BF49_0010
Hypothetical protein.
  
   
 0.547
BF49_7335
Bll0819 protein.
  
   
 0.547
BF49_6750
Possible NADH oxidoreductase.
  
     0.544
BF49_0128
TesBlike acylCoA thioesterase 4.
  
     0.541
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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