Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4016Twocomponent sensor histidine kinase. (446 aa)    
Predicted Functional Partners:
BF49_5406
Twocomponent sensor histidine kinase.
 
  
 
0.920
BF49_4017
Twocomponent response regulator.
 
 0.913
BF49_5405
Twocomponent response regulator.
 
 0.817
BF49_5959
Twocomponent response regulator.
 
 0.814
BF49_2039
InterPro IPR000792IPR001789 COGs COG2197.
 
 0.813
BF49_3883
Twocomponent response regulator.
 
 0.813
BF49_6351
Twocomponent response regulator.
 
 0.813
BF49_2322
DNAbinding response regulator LuxR family.
 
 0.811
BF49_3324
Twocomponent response regulator.
 
 0.758
BF49_3325
Probable twocomponent sensor histidine kinase.
 
     0.705
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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