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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_4020RibosomalproteinS5palanine acetyltransferase. (195 aa)    
Predicted Functional Partners:
BF49_4019
Mitochondrial processing peptidaselike protein EC 342464; Belongs to the peptidase M16 family.
  
    0.772
BF49_4018
Threonine synthase EC 4231.
       0.769
rnc
Ribonuclease III EC 31263; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.592
BF49_3472
Chemotaxis regulator transmits chemoreceptor signals to flagelllar motor components CheY.
  
     0.581
BF49_4021
FIG166913 hypothetical protein.
       0.571
murB
UDPNacetylenolpyruvoylglucosamine reductase EC 111158; Cell wall formation.
  
    0.544
BF49_3395
FIG00450379 hypothetical protein.
  
     0.529
BF49_2234
COG1896 Predicted hydrolases of HD superfamily.
 
   
 0.495
BF49_3171
Glutamate synthase NADPH large chain EC 14113.
   
 
 0.482
BF49_5665
Nacetylneuraminate synthase EC 25156.
  
 
 0.477
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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