Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4027FIG00450254 hypothetical protein. (178 aa)    
Predicted Functional Partners:
BF49_1620
FIG00440661 hypothetical protein.
  
     0.770
BF49_4303
FIG035060 hypothetical protein.
  
     0.748
BF49_6536
Membrane protein putative.
  
     0.742
BF49_6431
FIG00440573 hypothetical protein.
  
     0.735
BF49_4028
Uncharacterized protein sll1880 YjbQ family.
  
    0.728
BF49_3980
FIG00450046 hypothetical protein.
 
     0.726
BF49_6539
FIG00441513 hypothetical protein.
  
     0.726
BF49_6432
Bll5137 protein.
  
     0.721
BF49_0733
Large exoproteins involved in heme utilization or adhesion.
  
     0.720
BF49_1264
FIG00442049 hypothetical protein.
  
     0.720
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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