Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4046Ironresponsive regulator Irr; Belongs to the Fur family. (160 aa)    
Predicted Functional Partners:
BF49_6318
Alkyl hydroperoxide reductase subunit Clike protein.
  
  
 0.648
BF49_3157
L2aminothiazoline4carboxylic acid hydrolase EC 352.
  
    0.604
BF49_6597
Oacetylhomoserine sulfhydrylase EC 25149.
  
    0.597
rpoB
DNAdirected RNA polymerase beta subunit EC 2776; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.526
BF49_1008
Colicin V production protein.
 
     0.514
BF49_3197
Zinc ABC transporter ATPbinding protein ZnuC.
  
  
 0.514
BF49_4045
FIG00441573 hypothetical protein.
       0.508
BF49_5893
DNAdirected RNA polymerase alpha subunit EC 2776.
   
 
 0.487
BF49_5901
DNAdirected RNA polymerase alpha subunit EC 2776.
   
 
 0.487
rpoA
DNAdirected RNA polymerase alpha subunit EC 2776; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.487
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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