Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4059FIG00441471 hypothetical protein. (270 aa)    
Predicted Functional Partners:
BF49_4058
FIG00793732 hypothetical protein.
       0.778
BF49_4061
ABC transporter ATPbinding protein.
     
 0.524
BF49_4060
Blr7934 hypothetical protein.
       0.523
BF49_4057
Lfuconolactone hydrolase.
       0.515
BF49_2085
vWFAlike protein with metal ion dependent adhesion motif MIDAS.
  
    0.495
BF49_6553
Peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.470
BF49_0116
PTS IIAlike nitrogenregulatory protein PtsN.
    
 0.451
BF49_3407
Blr1245 unknown protein.
  
     0.422
psd
Phosphatidylserine decarboxylase EC 41165; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
   
   0.400
BF49_5018
Phosphatidylserine decarboxylase proenzyme EC 41165; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
   
   0.400
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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