Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4060Blr7934 hypothetical protein. (508 aa)    
Predicted Functional Partners:
BF49_4061
ABC transporter ATPbinding protein.
 
    0.928
BF49_4392
Hypothetical protein.
 
     0.636
BF49_5720
FIG00442610 hypothetical protein.
  
     0.625
BF49_5037
FIG00442610 hypothetical protein.
  
     0.619
BF49_4058
FIG00793732 hypothetical protein.
 
     0.615
BF49_1384
Blr3364 hypothetical protein.
  
     0.594
BF49_0448
FIG00442104 hypothetical protein.
  
     0.589
BF49_1064
Mlr5283 protein.
  
     0.571
BF49_0814
Permease of the drugmetabolite transporter DMT superfamily.
  
     0.560
BF49_2983
Hypothetical protein.
  
     0.550
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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