Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4106Betalactamaselike. (282 aa)    
Predicted Functional Partners:
BF49_4107
FIG00441352 hypothetical protein.
       0.550
BF49_4105
2keto4pentenoate hydratase2oxohepta3ene17dioic acid hydratase catechol pathway.
       0.511
BF49_4104
Glutathione Stransferase family protein.
 
 
   0.475
BF49_4398
Protein of unknown function DUF882.
  
    0.437
BF49_5311
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.435
BF49_0497
FIG00441656 hypothetical protein.
  
     0.433
BF49_3442
Rhodaneserelated sulfurtransferase.
 
 
 0.406
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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