Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4156Bll7835 hypothetical protein. (211 aa)    
Predicted Functional Partners:
BF49_0820
Pyridoxal kinase EC 27135; Belongs to the pyridoxine kinase family.
     
  0.894
pdxJ
Pyridoxine 5phosphate synthase EC 26992; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.
     
  0.894
BF49_2412
Flavodoxin reductases ferredoxinNADPH reductases family 1 Vanillate Odemethylase oxidoreductase EC 11413.
      0.892
BF49_4322
COGs COG3558.
 
     0.713
BF49_4155
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.608
BF49_4454
Blr7068 hypothetical protein.
 
     0.424
BF49_5908
Transcriptional regulator TetR family.
  
     0.412
BF49_5087
Hydrolase alphabeta fold family protein At1g52510AT4G12830 homolog group3.
 
     0.410
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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