STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4212Type IIIV secretion system secretin RcpACpaC associated with Flp pilus assembly; Belongs to the bacterial secretin family. (491 aa)    
Predicted Functional Partners:
BF49_4213
Flp pilus assembly protein RcpCCpaB.
 
  
 0.987
BF49_4209
Type IIIV secretion system ATP hydrolase TadAVirB11CpaF TadA subfamily.
  
 0.953
BF49_4210
Type IIIV secretion system ATPase TadZCpaE associated with Flp pilus assembly.
 
  
 0.953
BF49_0175
Flp pilus assembly protein RcpCCpaB.
 
  
 0.948
BF49_4207
Type IIIV secretion system protein TadC associated with Flp pilus assembly.
 
  
 0.942
BF49_4214
Type IV prepilin peptidase TadVCpaA.
 
  
 0.920
BF49_4211
Flp pilus assembly protein CpaD.
 
   
 0.918
BF49_4208
Flp pilus assembly protein TadB.
 
  
 0.913
BF49_0178
Type IIIV secretion system ATPase TadZCpaE associated with Flp pilus assembly.
 
  
 0.912
BF49_4219
Similar to TadZCpaE associated with Flp pilus assembly.
 
  
 0.844
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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