Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4217Mll6489 protein. (270 aa)    
Predicted Functional Partners:
BF49_4570
Hypothetical protein.
   
 
 0.799
BF49_4571
Salicylate hydroxylase EC 114131.
   
 
 0.799
BF49_1688
Squalenehopene cyclase EC 549917.
   
 
 0.591
BF49_2332
FIG003603 membrane protein putative.
   
 
 0.591
BF49_4207
Type IIIV secretion system protein TadC associated with Flp pilus assembly.
  
    0.584
BF49_4208
Flp pilus assembly protein TadB.
  
    0.569
BF49_0474
InterPro IPR001687IPR006021 COGs COG1525.
   
    0.549
BF49_1969
FIG00439413 hypothetical protein.
   
    0.549
BF49_1690
Phytoene synthase EC 25132.
  
 
 0.548
BF49_1691
Phytoene synthase EC 25132.
  
 
 0.544
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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