BF49_4267 protein (Bradyrhizobium sp.) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BF49_4267

InterPro IPR002797 COGs COG2244. (452 aa)

Predicted Functional Partners:

BF49_6587

0.894

BF49_6586

0.830

BF49_6589

0.829

BF49_2513

0.803

BF49_2511

0.802

BF49_6588

0.782

BF49_6592

0.762

BF49_5860

0.756

BF49_6591

0.743

BF49_2512

0.725

Your Current Organism:

Bradyrhizobium sp.

NCBI taxonomy Id: 376
Other names: B. sp.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
BF49_2511	BF49_2512	dTDP4dehydrorhamnose 35epimerase EC 51313; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	Glucose1phosphate thymidylyltransferase EC 27724; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.	0.995
BF49_2511	BF49_2513	dTDP4dehydrorhamnose 35epimerase EC 51313; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	dTDPglucose 46dehydratase EC 42146; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.	0.999
BF49_2511	BF49_4267	dTDP4dehydrorhamnose 35epimerase EC 51313; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	InterPro IPR002797 COGs COG2244.	0.802
BF49_2511	BF49_6587	dTDP4dehydrorhamnose 35epimerase EC 51313; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	Probable glycosyl transferase.	0.841
BF49_2511	BF49_6588	dTDP4dehydrorhamnose 35epimerase EC 51313; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	Glycosyltransferase.	0.564
BF49_2512	BF49_2511	Glucose1phosphate thymidylyltransferase EC 27724; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.	dTDP4dehydrorhamnose 35epimerase EC 51313; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	0.995
BF49_2512	BF49_2513	Glucose1phosphate thymidylyltransferase EC 27724; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.	dTDPglucose 46dehydratase EC 42146; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.	0.999
BF49_2512	BF49_4267	Glucose1phosphate thymidylyltransferase EC 27724; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.	InterPro IPR002797 COGs COG2244.	0.725
BF49_2512	BF49_6587	Glucose1phosphate thymidylyltransferase EC 27724; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.	Probable glycosyl transferase.	0.910
BF49_2512	BF49_6588	Glucose1phosphate thymidylyltransferase EC 27724; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.	Glycosyltransferase.	0.502
BF49_2513	BF49_2511	dTDPglucose 46dehydratase EC 42146; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.	dTDP4dehydrorhamnose 35epimerase EC 51313; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	0.999
BF49_2513	BF49_2512	dTDPglucose 46dehydratase EC 42146; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.	Glucose1phosphate thymidylyltransferase EC 27724; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.	0.999
BF49_2513	BF49_4267	dTDPglucose 46dehydratase EC 42146; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.	InterPro IPR002797 COGs COG2244.	0.803
BF49_2513	BF49_6587	dTDPglucose 46dehydratase EC 42146; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.	Probable glycosyl transferase.	0.622
BF49_2513	BF49_6588	dTDPglucose 46dehydratase EC 42146; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.	Glycosyltransferase.	0.440
BF49_4267	BF49_2511	InterPro IPR002797 COGs COG2244.	dTDP4dehydrorhamnose 35epimerase EC 51313; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	0.802
BF49_4267	BF49_2512	InterPro IPR002797 COGs COG2244.	Glucose1phosphate thymidylyltransferase EC 27724; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.	0.725
BF49_4267	BF49_2513	InterPro IPR002797 COGs COG2244.	dTDPglucose 46dehydratase EC 42146; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.	0.803
BF49_4267	BF49_5860	InterPro IPR002797 COGs COG2244.	FIG00442729 hypothetical protein.	0.756
BF49_4267	BF49_6586	InterPro IPR002797 COGs COG2244.	FIG00442552 hypothetical protein.	0.830