Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_4270Probable taurine catabolism dioxygenase. (295 aa)    
Predicted Functional Partners:
BF49_6553
Peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.846
BF49_2686
Osuccinylbenzoic acidCoA ligase EC 62126.
 
 
 0.808
BF49_6971
Hypothetical protein.
    
 0.736
BF49_2689
Alkanesulfonate monooxygenase EC 114145.
 
 
 0.652
BF49_6462
Nitrilotriacetate monooxygenase component A.
 
 
 0.638
BF49_5026
Taurinebinding periplasmic protein TauA.
 
  
 0.634
BF49_3112
Nitrilotriacetate monooxygenase component A.
 
 
 0.614
BF49_2827
Monooxygenase component A.
 
 
 0.607
BF49_7289
FIG00441112 hypothetical protein.
 
 
 0.597
BF49_3127
Long-chain alkane monooxygenase; Coenzyme F420dependent N5N10methylene tetrahydromethanopterin reductase and related flavindependent oxidoreductases.
 
 
 0.588
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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