Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4284ABCtype multidrug transport system ATPase and permease components. (608 aa)    
Predicted Functional Partners:
BF49_6971
Hypothetical protein.
  
 0.815
BF49_1255
ABC transporter HlyBMsbA family.
  
 
0.698
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 0.685
BF49_0958
Cyclolysin secretion ATPbinding protein.
   
 
 0.657
BF49_2158
Probable RuBisCoexpression protein CbbX.
   
 0.626
BF49_6553
Peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.585
rpsB
SSU ribosomal protein S2p SAe; Belongs to the universal ribosomal protein uS2 family.
    
  0.578
BF49_0984
Malonyl CoAacyl carrier protein transacylase EC 23139.
   
 0.575
BF49_0119
ABC transporter ATPbinding protein.
    
 0.569
BF49_1883
Serinethreonine protein kinase.
  
 
 0.569
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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