BF49_4306 protein (Bradyrhizobium sp.) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BF49_4306

FIG006542 Phosphoesterase. (274 aa)

Predicted Functional Partners:

BF49_4305

0.801

folD

0.696

BF49_4304

0.579

BF49_4303

0.474

Your Current Organism:

Bradyrhizobium sp.

NCBI taxonomy Id: 376
Other names: B. sp.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BF49_4303	BF49_4304	BF49_4303	BF49_4304	FIG035060 hypothetical protein.	FIG026765 hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.	0.825
BF49_4303	BF49_4305	BF49_4303	BF49_4305	FIG035060 hypothetical protein.	5formyltetrahydrofolate cycloligase EC 6332; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.	0.474
BF49_4303	BF49_4306	BF49_4303	BF49_4306	FIG035060 hypothetical protein.	FIG006542 Phosphoesterase.	0.474
BF49_4304	BF49_4303	BF49_4304	BF49_4303	FIG026765 hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.	FIG035060 hypothetical protein.	0.825
BF49_4304	BF49_4305	BF49_4304	BF49_4305	FIG026765 hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.	5formyltetrahydrofolate cycloligase EC 6332; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.	0.576
BF49_4304	BF49_4306	BF49_4304	BF49_4306	FIG026765 hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.	FIG006542 Phosphoesterase.	0.579
BF49_4305	BF49_4303	BF49_4305	BF49_4303	5formyltetrahydrofolate cycloligase EC 6332; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.	FIG035060 hypothetical protein.	0.474
BF49_4305	BF49_4304	BF49_4305	BF49_4304	5formyltetrahydrofolate cycloligase EC 6332; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.	FIG026765 hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.	0.576
BF49_4305	BF49_4306	BF49_4305	BF49_4306	5formyltetrahydrofolate cycloligase EC 6332; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.	FIG006542 Phosphoesterase.	0.801
BF49_4305	folD	BF49_4305	BF49_0301	5formyltetrahydrofolate cycloligase EC 6332; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.	Methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.	0.993
BF49_4306	BF49_4303	BF49_4306	BF49_4303	FIG006542 Phosphoesterase.	FIG035060 hypothetical protein.	0.474
BF49_4306	BF49_4304	BF49_4306	BF49_4304	FIG006542 Phosphoesterase.	FIG026765 hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.	0.579
BF49_4306	BF49_4305	BF49_4306	BF49_4305	FIG006542 Phosphoesterase.	5formyltetrahydrofolate cycloligase EC 6332; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.	0.801
BF49_4306	folD	BF49_4306	BF49_0301	FIG006542 Phosphoesterase.	Methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.	0.696
folD	BF49_4305	BF49_0301	BF49_4305	Methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.	5formyltetrahydrofolate cycloligase EC 6332; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.	0.993
folD	BF49_4306	BF49_0301	BF49_4306	Methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.	FIG006542 Phosphoesterase.	0.696