Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4335Hypothetical protein. (80 aa)    
Predicted Functional Partners:
BF49_4334
Transcriptional regulatory protein; Belongs to the LysR transcriptional regulatory family.
       0.773
BF49_4336
ABC transporter substratebinding protein.
       0.565
BF49_4337
Putrescine transport ATPbinding protein PotA TC 3A1111; Belongs to the ABC transporter superfamily.
       0.522
BF49_4338
Bindingproteindependent transport systems inner membrane component precursor.
       0.522
BF49_4339
ABCtype spermidineputrescine transport system permease component II.
       0.522
BF49_4340
Opine oxidase subunit B.
       0.519
BF49_4341
Opine oxidase subunit C.
       0.483
BF49_4342
Opine oxidase subunit A.
       0.483
BF49_4343
Sarcosine oxidase beta subunit EC 1531.
       0.480
BF49_4344
RidAYER057cUK114 superfamily group 2 YoaBlike protein.
       0.457
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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