Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_4351Nmethylhydantoinase B EC 35214. (552 aa)    
Predicted Functional Partners:
BF49_1418
Nmethylhydantoinase A EC 35214.
 0.999
BF49_4350
Nmethylhydantoinase A EC 35214.
 0.999
BF49_1417
Nmethylhydantoinase B EC 35214.
  
  
 
0.925
BF49_1194
Cytosine deaminase EC 3541.
     
  0.919
BF49_6761
Cytosine deaminase EC 3541.
     
  0.900
BF49_4353
TRAP dicarboxylate transporter DctQ subunit unknown substrate 5.
 
     0.717
BF49_4352
TRAP transporter solute receptor unknown substrate 5.
 
     0.702
BF49_4354
TRAP dicarboxylate transporter DctM subunit unknown substrate 5.
 
     0.608
cobB-3
NADdependent protein deacetylase of SIR2 family; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
       0.483
BF49_1962
Isochorismatase EC 3321.
    
  0.443
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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