STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4353TRAP dicarboxylate transporter DctQ subunit unknown substrate 5. (197 aa)    
Predicted Functional Partners:
BF49_4352
TRAP transporter solute receptor unknown substrate 5.
 
  
 0.981
BF49_4354
TRAP dicarboxylate transporter DctM subunit unknown substrate 5.
 
  
  0.914
BF49_6429
TRAPtype C4dicarboxylate transport system periplasmic component.
 
  
 0.848
BF49_6995
TRAP transporter solute receptor unknown substrate 5.
 
  
 0.848
BF49_6994
TRAP dicarboxylate transporter DctM subunit unknown substrate 5.
 
  
  0.791
BF49_6993
TRAP dicarboxylate transporter DctQ subunit unknown substrate 5.
  
  
  0.786
BF49_4351
Nmethylhydantoinase B EC 35214.
 
     0.717
BF49_4350
Nmethylhydantoinase A EC 35214.
 
     0.711
BF49_4151
TRAP transporter solute receptor unknown substrate 3.
 
  
 0.591
BF49_1294
TRAP dicarboxylate transporter DctM subunit unknown substrate 6.
  
 
 0.584
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.