STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4354TRAP dicarboxylate transporter DctM subunit unknown substrate 5. (434 aa)    
Predicted Functional Partners:
BF49_4352
TRAP transporter solute receptor unknown substrate 5.
 
 
 0.970
BF49_4353
TRAP dicarboxylate transporter DctQ subunit unknown substrate 5.
 
  
  0.922
BF49_6995
TRAP transporter solute receptor unknown substrate 5.
 
 
 0.865
BF49_1856
TRAPtype C4dicarboxylate transport system periplasmic component.
 
 
 0.835
BF49_4749
TRAPtype C4dicarboxylate transport system periplasmic component.
 
 0.835
BF49_5115
TRAPtype C4dicarboxylate transport system periplasmic component.
 
 
 0.835
BF49_5576
TRAPtype C4dicarboxylate transport system periplasmic component.
 
 
 0.830
BF49_7153
TRAPtype C4dicarboxylate transport system periplasmic component.
 
 
 0.829
BF49_1941
TRAPtype C4dicarboxylate transport system periplasmic component.
 
 
 0.824
BF49_1891
TRAPtype C4dicarboxylate transport system periplasmic component.
 
 
 0.821
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.