Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4357Hypothetical protein. (255 aa)    
Predicted Functional Partners:
BF49_4356
Bll7638 putative cytochrome C6 precursor.
 
  
  0.889
BF49_7046
FIG00442713 hypothetical protein.
  
 0.785
BF49_4355
Quinoprotein alcohol dehydrogenase.
 
  
 0.631
BF49_3122
Glutamate Aspartate transport ATPbinding protein GltL TC 3A134.
 
 0.609
BF49_3124
Glutamate Aspartate transport system permease protein GltJ TC 3A134.
 
 0.605
BF49_5181
Lproline glycine betaine binding ABC transporter protein ProX TC 3A1121 Osmotic adaptation.
     
 0.600
BF49_1113
Glutamate Aspartate transport system permease protein GltJ TC 3A134.
 
 0.599
BF49_1114
Glutamate Aspartate transport system permease protein GltK TC 3A134.
 
 0.590
BF49_3123
Glutamate Aspartate transport system permease protein GltK TC 3A134.
 
 0.590
BF49_7065
ABC transporter ATPbinding protein.
 
 0.577
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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