STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4363RNA polymerase sigma70 factor ECF subfamily; Belongs to the sigma-70 factor family. (438 aa)    
Predicted Functional Partners:
BF49_4362
RNA polymerase sigma70 factor ECF subfamily.
 
     0.952
BF49_5042
DGPFAETKE domain protein.
 
     0.796
BF49_4371
PhnB protein.
 
     0.793
BF49_6152
RNA polymerase sigma70 factor ECF subfamily.
 
     0.772
BF49_4364
Hypothetical protein.
 
     0.666
BF49_4365
PhnB protein putative DNA binding 3demethylubiquinone9 3methyltransferase domain protein.
 
     0.622
BF49_4361
D3phosphoglycerate dehydrogenase EC 11195.
       0.535
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.