Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4365PhnB protein putative DNA binding 3demethylubiquinone9 3methyltransferase domain protein. (137 aa)    
Predicted Functional Partners:
BF49_4364
Hypothetical protein.
 
     0.734
BF49_2390
3demethylubiquinone9 3methyltransferase.
 
  
 0.731
BF49_1002
Gfalike protein.
  
    0.725
BF49_4363
RNA polymerase sigma70 factor ECF subfamily; Belongs to the sigma-70 factor family.
 
     0.621
BF49_4362
RNA polymerase sigma70 factor ECF subfamily.
 
    0.609
BF49_5042
DGPFAETKE domain protein.
 
    0.553
BF49_4371
PhnB protein.
 
    0.547
BF49_2951
FIG00794727 hypothetical protein.
   
    0.530
BF49_1802
Phenylacetic acid degradation operon negative regulatory protein PaaX.
   
    0.487
BF49_5319
Hypothetical protein.
  
  
 0.436
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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