Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BF49_4380Tol biopolymer transport system TolR protein. (149 aa)    
Predicted Functional Partners:
tolQ
MotATolQExbB proton channel family protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 0.997
BF49_1148
MotATolQExbB proton channel family protein.
 
 0.987
BF49_4381
TolA protein.
  
 0.987
tolB
Tol-Pal system protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
  
 0.968
BF49_1146
Ferric siderophore transport system periplasmic binding protein TonB.
  
 0.946
BF49_5961
FIG00440141 hypothetical protein.
  
 0.925
BF49_6400
TolA protein.
  
 0.924
BF49_0805
Hypothetical protein.
  
 0.882
BF49_0834
Prolinealaninerich repetetive membrane anchored protein.
  
 0.882
pal
Outer membrane lipoprotein omp16 precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 
 0.873
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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