Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_4381TolA protein. (319 aa)    
Predicted Functional Partners:
BF49_4380
Tol biopolymer transport system TolR protein.
  
 0.987
tolQ
MotATolQExbB proton channel family protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 0.970
tolB
Tol-Pal system protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.941
BF49_1147
Biopolymer transport protein ExbDTolR.
  
 0.924
BF49_1148
MotATolQExbB proton channel family protein.
  
 0.893
BF49_5407
Outer membrane receptor proteins mostly Fe transport.
   
 0.804
BF49_5961
FIG00440141 hypothetical protein.
  
 0.782
BF49_6400
TolA protein.
  
     0.754
BF49_6786
Sporulation related domain.
  
     0.748
BF49_2173
NicelCobaltspecific TonBdependent outer membrane receptor.
  
 0.720
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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