Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_4383Diguanylate cyclasephosphodiesterase GGDEF EAL domains with PASPAC sensors. (776 aa)    
Predicted Functional Partners:
BF49_3016
Diguanylate phosphodiesterase.
 
  
 0.736
BF49_7310
Metal dependent phosphohydrolase with a response regulator receiver domain.
 
  
 0.675
BF49_0859
FIG00439631 hypothetical protein.
 
  
 0.652
BF49_3110
Diguanylate cyclasephosphodiesterase GGDEF EAL domains with PASPAC sensors.
 
 
0.604
BF49_7235
Diguanylate cyclasephosphodiesterase GGDEF EAL domains with PASPAC sensors.
 
 
0.585
BF49_2142
Twocomponent hybrid sensor and regulator.
  
 
 0.524
tolB
Tol-Pal system protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
       0.489
BF49_4381
TolA protein.
       0.488
BF49_4380
Tol biopolymer transport system TolR protein.
       0.487
BF49_3323
Diguanylate cyclase putative.
 
 
0.485
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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