Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4390FIG01006436 hypothetical protein. (504 aa)    
Predicted Functional Partners:
BF49_1559
Cytochrome c heme lyase subunit CcmF.
  
 
 0.743
BF49_1558
Cytochrome c heme lyase subunit CcmL; Possible subunit of a heme lyase.
  
  
 0.595
BF49_4389
Hypothetical protein.
       0.590
BF49_0636
Bll0142 protein.
  
     0.585
BF49_6270
Hypothetical protein.
 
     0.574
BF49_5306
TPR repeat.
  
 0.548
BF49_4391
Flp pilus assembly protein pilin Flp.
 
     0.496
BF49_5748
FIG00440209 hypothetical protein.
  
     0.486
BF49_3355
FIG00444176 hypothetical protein.
  
     0.473
BF49_6940
ABC transporter substratebinding protein.
  
     0.447
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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