Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4392Hypothetical protein. (327 aa)    
Predicted Functional Partners:
BF49_4189
Hypothetical protein.
  
 
 0.845
BF49_2481
Eight transmembrane protein EpsH.
    
 0.812
BF49_5180
FIG00439865 hypothetical protein.
 
   
 0.786
BF49_5947
Possible cyclic nucleotidebinding domain.
  
    0.767
BF49_5720
FIG00442610 hypothetical protein.
 
     0.753
BF49_5037
FIG00442610 hypothetical protein.
 
     0.747
BF49_0448
FIG00442104 hypothetical protein.
  
     0.733
BF49_3570
Hypothetical protein.
  
     0.728
BF49_5969
Bll5679 protein.
  
 
 
 0.713
BF49_1638
Bll3052 protein.
  
 
 0.707
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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