Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4393Transcriptional regulator TetR family. (226 aa)    
Predicted Functional Partners:
BF49_6068
FIG00442381 hypothetical protein.
  
     0.567
BF49_1638
Bll3052 protein.
  
     0.534
BF49_1563
FIG00442554 hypothetical protein.
  
     0.521
BF49_5969
Bll5679 protein.
  
     0.508
BF49_4392
Hypothetical protein.
 
     0.507
BF49_5947
Possible cyclic nucleotidebinding domain.
  
     0.492
BF49_5005
FIG00442082 hypothetical protein.
  
     0.483
BF49_4002
FIG00853591 hypothetical protein.
  
   
 0.482
BF49_0884
Blr6985 hypothetical protein.
  
     0.445
BF49_6906
23dihydroxybenzoateAMP ligase EC 27758.
  
     0.420
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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