Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4398Protein of unknown function DUF882. (521 aa)    
Predicted Functional Partners:
BF49_4399
FIG01004475 hypothetical protein.
 
   
 0.847
BF49_1900
LDtranspeptidase YcbB.
 
   
 0.757
BF49_3931
Murein endopeptidase.
  
     0.722
BF49_2801
Hypothetical protein.
 
    0.624
BF49_7286
Hypothetical metalbinding enzyme YcbL homolog.
 
    0.613
BF49_0588
Probable exported protein STY0357.
  
    0.585
BF49_6099
FIG00440034 hypothetical protein.
  
     0.583
BF49_2784
FIG00441216 hypothetical protein.
  
     0.578
BF49_0497
FIG00441656 hypothetical protein.
  
    0.560
BF49_1372
FIG00444702 hypothetical protein.
  
    0.560
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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