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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF49_4400Nitrogen regulation protein NRI. (497 aa)    
Predicted Functional Partners:
BF49_0118
RNA polymerase sigma54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.786
BF49_7023
Nitrogen regulation protein NtrB EC 27133.
 
 0.713
BF49_3575
Twocomponent sensor histidine kinase.
 
 0.692
BF49_3244
Chemotaxis protein methyltransferase CheR EC 21180.
 
 0.669
BF49_7154
Signal transduction histidine kinase.
 
 0.665
BF49_4401
Oligoendopeptidase F EC 3424.
       0.605
BF49_0769
Twocomponent hybrid sensor and regulator.
 
 0.586
BF49_6366
Chemotaxis regulator transmits chemoreceptor signals to flagelllar motor components CheY.
 
 0.571
BF49_4731
Twocomponent response regulator.
  
     0.544
BF49_2142
Twocomponent hybrid sensor and regulator.
  
 0.541
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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