Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4417GGDEF family protein. (261 aa)    
Predicted Functional Partners:
BF49_0447
Twocomponent response regulator.
 
  
 0.848
BF49_5519
FOG EAL domain protein.
 
  
 0.838
BF49_3016
Diguanylate phosphodiesterase.
 
  
 0.726
BF49_7310
Metal dependent phosphohydrolase with a response regulator receiver domain.
 
 
 0.715
BF49_0859
FIG00439631 hypothetical protein.
 
 
 0.704
purE
Phosphoribosylaminoimidazole carboxylase catalytic subunit EC 41121; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
       0.695
BF49_1446
Sensory box histidine kinaseresponse regulator.
 
 
 0.688
BF49_5131
Response regulator.
 
 
 0.662
purK
Phosphoribosylaminoimidazole carboxylase ATPase subunit EC 41121; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).
       0.658
BF49_2142
Twocomponent hybrid sensor and regulator.
  
 
 0.613
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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