Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4439AsmA family protein. (638 aa)    
Predicted Functional Partners:
BF49_0733
Large exoproteins involved in heme utilization or adhesion.
 
   
 0.769
BF49_2099
FIG00440914 hypothetical protein.
  
     0.724
BF49_7320
FIG00442456 hypothetical protein.
  
     0.708
BF49_3479
FIG00440260 hypothetical protein.
  
     0.707
BF49_3965
Bll7976 protein.
  
     0.697
BF49_2748
Chromosome segregation ATPases.
  
     0.693
BF49_3263
FIG00439845 hypothetical protein.
  
     0.691
BF49_4274
Probable periplasmic protein Cj0610c imported Campylobacter jejuni strain NCTC 11168.
  
     0.680
BF49_6068
FIG00442381 hypothetical protein.
  
     0.677
BF49_3022
FIG00441159 hypothetical protein.
  
     0.675
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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