Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4442Nitrite reductase accessory protein NirV. (292 aa)    
Predicted Functional Partners:
BF49_4443
Coppercontaining nitrite reductase EC 1721; Belongs to the multicopper oxidase family.
 
     0.901
BF49_0432
Sulfatase family protein EC 313.
 
   0.814
BF49_5933
Dimethylhistidine Nmethyltransferase.
  
 
 0.685
BF49_1284
Glutamine amidotransferases classII.
  
 
 0.644
BF49_1470
Nitricoxide reductase subunit B EC 17997; Belongs to the heme-copper respiratory oxidase family.
 
   
 0.630
BF49_4446
FIG00442096 hypothetical protein.
 
     0.585
BF49_4001
Glutamatecysteine ligase EC 6322; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). Belongs to the glutamate--cysteine ligase type 2 family. EgtA subfamily.
  
 
 0.573
BF49_1468
Nitric oxide reductase activation protein NorD.
 
   
 0.572
BF49_4447
Nitric oxide responding transcriptional regulator NnrR CrpFnr family.
 
     0.568
BF49_1471
Nitricoxide reductase subunit C EC 17997.
 
     0.556
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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