STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF49_4445Coproporphyrinogen III oxidase oxygenindependent EC 139922; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (450 aa)    
Predicted Functional Partners:
hemE
Uroporphyrinogen III decarboxylase EC 41137; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
 
 
 0.995
hemF
Coproporphyrinogen III oxidase aerobic EC 1333; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
    
 0.943
BF49_0208
Protoporphyrinogen IX oxidase novel form HemJ EC 13.
    
 0.936
BF49_1925
Cytochrome c oxidase subunit CcoN EC 1931; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.919
BF49_3351
Outer membrane protein W precursor.
 
  
 0.904
BF49_1924
Cytochrome c oxidase subunit CcoO EC 1931.
 
  
 0.887
BF49_1921
Type cbb3 cytochrome oxidase biogenesis protein CcoG involved in Cu oxidation.
 
  
 0.855
BF49_5861
Type cbb3 cytochrome oxidase biogenesis protein CcoG involved in Cu oxidation.
 
  
 0.853
BF49_3814
Type cbb3 cytochrome oxidase biogenesis protein CcoG involved in Cu oxidation.
 
  
 0.847
BF49_1922
Cytochrome c oxidase subunit CcoP EC 1931; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
  
 0.742
Your Current Organism:
Bradyrhizobium sp.
NCBI taxonomy Id: 376
Other names: B. sp.
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